- General Planning Division：Research and development, international cooperation, control evaluation, integrated projects.
- Disease Control Division：Vaccination, infection control, acute infectious disease, chronic infectious disease.
- Food and Drug Division：License management, advertisement audit, offense management, food, drug and cosmetics manufacturer guidance, hygiene, inspection, consumer protection.
- Medical Affairs Division：Medical affairs management, medical quality, emergency medical service.
- Health Promotion Division：Promotion of health, maternal and child health and eugenic health, children and adolescents’ healthcare, cancer prevention, adult healthcare, tobacco hazards control.
- Long-Term Care Division：Long-term care management, long-term care service, health special care for minority.
- Mental Health Division：Mental health, treatment and prevention, prevention of suicide.
- Public Health Inspection Division：Inspection of health violations.
- Laboratory Division：Public health inspection and food inspection.
- Systems Administration Office：Food, drug and public health examination and support for test of public health related inspection samples. Payment test for citizen and companies.
- Administrative Service Office：Assets and document management, general affairs, and cashier.
- Accounting Office：Financial accounts and accounting.
- Statistics Office：Vital statistics and administration statistics.
- Personnel Office：Personnel management.
- Government Ethics Office：Prevention, investigation and discipline of corruption; maintenance of administrative security.
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